#NEXUS [File downloaded from graemetlloyd.com] BEGIN DATA; DIMENSIONS NTAX=14 NCHAR=381 ; FORMAT DATATYPE=DNA SYMBOLS=" A C G T R Y M K S W H B V D N" MISSING=? GAP=- ; MATRIX Opossum_beta GATAAAAGG-CAGAGCTAGATTAGTTTCAGCATCATA-CTACTTTTGACACAGCTCTG--TGTTCACAAGTAAACT--------TTCAAA----------GTAAGTACCAGGGGCCATGGAAAAGGGCC-----ATGAAGA------------GGGGCAGGGAATGACAACT-GCAATTAGTCGT-----CGAATAGTAA---AAACTTGACT-ACCTCCTTTCTATTTCTTT-CCCAAAGGCCTTGCCCATCTGGTGGTCTTCA---TTGAGCTGAGTCCACTATGTTCCATATAGTCTACCTT-CTGCACATGGAATGAATAGGGTCTGACCCTGTGGGCATGGTCCCTGACCAATAAACTGCATTC------CTTCCA Opossum_epsilon AATAAAAGG-CAGCCCTAGCCCTACTGCTGCATCAAC-CTGCTTCTGACACTTCTG----TGTTGACAAGCAAGCT--------TACAAAGACCAACATCGTAAGTA-TGGGAG----------------CAGTGGTA-GAAATTGAGCCCAGGAGTAACA-T------ACTGGCCT--TAAAAACTTCTGGCTCACTATGTGTATCTGCAAACTAATTTTTCCCTTC-----TCCTACAGATATAGCCCCGTCTATG-------------G---TGGGGGCCTGTGAACACATGGAGGCCCATCTC-------------TTACATGTAAGGAAGGGAGCA-ATGGTTACGTACTGCCTTGTGCTCCCACCCCTTGACCAA Mouse_beta CATATAAGG-TGAGGTAGGATCAGTTGCT-CCTACAT-TTGCTTCTGACATAGTTG----TGTTGACTCACAAC----------CCCAGAAACAGACATCGTTGGTATCCAGGTTACAAGGCAGCT----------CACAAGAAGAAGTTGGGTGCTTGGAGACAGAG-----GTCTGCTTTCCA-----G-CAGACACT---AACTTTCAGTGTCCCCTGT-CTATGTTTCCCTTTTTAGAC----CCCCTTTCCTGCTCTTGCCTGT-GAACAATGGTTAAT-TGTTCCCAAGAGAGCATCTG-TCAGTTGTTGGCAAA--ATGATAGACATTTGAAAATCTGTCTTCTGACAAATAAAAAGCATTT------ATGTTC Mouse_gamma_2 AATAAAAGGCCACCACTTCT--AGCAGCAGTACGTACTTCGCTTCTGACACTCCTG----TGATCACCAGCAACC---------TCCCAGACTTGCCATCGTAAGAA-TTG---------------TTTTTTAGTGTA-CAAAGAG---CTAGGG-AAATC------------------AAGAATTCTGAGGCTCCCT-----TATATTCT-ACTTGTCTTTCTCCAC-----TTAC-CAGGC----CCTCTCTCTAGCT-------GTCCAGCAATCCTGT--GTGTCCGCTAT-GCCTCCTCT-CTGCA-CATGAATACT--G---CTGTTCCTGA-AGCACA---TCATGTTAATAAAGCACCTCCGAATCAAAATCG Mouse_beta_H1 AATAAAAGGACAGGTCTTCA--GCCTCTTGAACATTC-TGGCTT-TTGCACACTTG----AGATCATCTCCAACG---------TTCTAGACCTCACACCGTAAGGA-ATGGAGGGAAATTAT-CCTTATGCATGGCA-GAAATTT---CCAGGGTTTCTA------------------TAGGGTTTTGTGGCACACT-----GATTTTTTAACTGCTAATGCACTAT-----GTCT-TAGAC----TCCAT-TCCAGT-------ACACTGGCAATCCCAT--GTGTCTATGAT-GCCCT-CTT-TGACTCCATGGGGACT--GAATTAGGCATTGAGAGCACAAATTTTGTTTAATAAAATTGATTCTTAATAACATTG Cow_beta CATAAAAGG-AAGAGCTGGGCCAGCTGCTGCTTACAC-TTGCTTCTGACACAACCG----TGTTCACTAGCAAC----------TACACAAACAGACACCGTAGGTATCCCACTTACAAGGCAGGTTTA--AGGAGAGTGAAATGCACCTGGGCGTGTGAGGACAGAGCCGTC-CCTGAGATTCA-----GAGAGCTGCT---GGCTTCCTCTGAC-CTTGTGCTGTTTT-CTCCCCCTAGGC----TCCCTTTCCTGC-------TTTCCAGGAAAGGTTTTT-TCATCCTCAGAGCCCAAAGA-TTGAATATGGAAAAATTATGA-AGTGTTTTGAGCATCTGGCCTCTGCCTAAT-AAAGACATTT------ATTTTC Goat_epsilon_1 AATAAAAGGCCACAGCATCC--AGCAGCAGCACAGAC-TTGCTTCTGATGCTTCTG----TGATCACCTGTAAGC---------TCCACGACTTGACATCGTAGAAA---GTGG-----ACTTCATGGGGGAGGATGGTGAATATGAGCCTGGCAAATCGG-CCAGAAAA-----ATTCTTCAAAA--ATCTGAGTTGCT---GATTTTCCATCTGCTATGTTTC------CATCTCATAGAT----TCTCT-TTACAAT----TCACCATTTTGTG----------TCCCCAGT-GCCTTCCTT-CTGCCCCTTGGGACTG--GGGTTTGGCCTTGTGAACCCAGATTCTGTTTAATAAAATACATTCTATTCAGTGATC Goat_eta AATAAAAGGCCATGCAGTGA--AGCAGCGGCACAGAC-TTGCTTCTGGCCCATTAT----GGATCACCAGTAAGC---------TCCCA-----GACACCGTAAGCA---GTGG------ACACAGGTAGGAGAGGAGTGTACAAAGGC--TGAAAGTGTT-CCAGAAAAGAGGGACTGGTTAGGTTTCTTACATACTCT---GACTTCTTATCTGTTCTGTGACTATGATCATCCCATAGTT----GCC------TG-------------GCCTACCATGCTGGTGCCTATCTGAAGGCCCAGTGTCCCAGA------A------GT-TCATCTCCTGAA-G-ACAGAGGGAGAGAGCTTTCTGCAGACATATAACTCCA Human_beta CATAAAAGT-CAGGGCAGAGCCATCTATTGCTTACAT-TTGCTTCTGACACAACTG----TGTTCACTAGCA------------ACCTCAAACAGACACCGTTGGTATCAAGGTTACAAGACAGGTTTA--AGGAGACCAATA-GAAACTGGGCATGTGGAGACAGAGAAGACTCTTGGGTTTCT-----GATAGGCACT---GACTCTCTCTGCCTATTGGTCTATTTTCCCACCCTTAGGC----TCGCTTTCTTGCTGTCCAATTTCTATTAAAGGTTCCT-TTGTTCCCTAAGTCCAACTA-CTAAACTGGGGGATATTATGA-AGGGCCTTGAGCATCTGGATTCTGCCTAATAAAAAACATTT------ATTTTC Human_epsilon AATAAAAGGCCAGACAGAGA--GGCAGCAGCACATAT-CTGCTTCCGACACAGCTG----CAATCACTAGCAAGC---------TCTCAGGCCTGGCATCGTAAGCA---TTGGTTCTCAATGCATGGGAATGAAGGGTGAATATTACCCTAGCAAGTTGA-TTGG-GAA-----AGTCCTCAAGATTTTTTGCATCTCT---AATTTTGTATCTGATATGGTGT------CATTTCATAGGT----TCTCT-TCCAGTT-------TGCAGGTGTTCCTGT----GACCCTGAC-ACCCTCCTT-CTGCA-CATGGGGACT--GGGCTTGGCCTTGAGAGAAAGCCTTCTGTTTAATAAAGTACATTTTCTTCAGTAATC Human_G_gamma AATAAAAGGAAGCACCCTTC--AGCAGTTCCACACAC-TCGCTTCTGGAACGTCTG----AGGTTATCAATAAGC---------TCCTAGTCCAGACGCCGTAGGCT-CTGGTGACCAGGACA-AGGGAGGGAAGGAAGGACCCTGTGCCTGGCAAAAGTC-C------AGGTCGCTTCTCAGGATTTGTGGCACCTTCT---GACTGTCAAACTGTTCTTG-TCAAT-----CTC-ACAGGC----------TCACT------------GCCCATGA--TGCAGAGCTTTCAAGGATAGGCTTTATTCTGCAAGCAATA---CAAATAAT---------AAATCTATTCTGCTAA------------------GAGATCA Rabbit_beta_1 CATAAAAGG-CAGAGCAGGG-CAGCTGCTGCTTACAC-TTGCTTTTGACACAACTG----TGTTTACTTGCAATC---------CCCCAAAACAGACAGAGTTGGTATCCTTTTTACAGCACA-ACTTA--ATGAGACAGATA-GAAACTGGTCTTGTAGAAACAGAGTAGTCGCCTGCTTTTCT-----GCCAGGTGCT---GACT-TCTCTCCC--CTGGGCTGTTTTCATTTTCTCAGGA----TCTTTTTCCCTCTGCCAAA------------------------------------------AATTATGGGGACATCATGA-AGCCCCTTGAGCATCTGACTTCTGGCTAATAAAGGAAATTT------ATTTTC Rabbit_beta_4 AATAAAAGGCCAAGCCTTGA--AGCAGCAGCACAAAG-CTGCTTCTGACACATTTGTGATCGATCACCAGCAAGC---------TCCCAGACGTGACACCGTAAGTA---TTGGTTCTCAATACTTGGTAGAGAAAGGCAAATATGACCCTGGTAGACTGA-CCAG-GAA-----ATTGCTCAA-AGTTTTTGTATCTCT---GATTTTCTATTTGCTGTTGTCC------CATCATATAGAC----TCTCT-TCCCAGT-------TTCTTTAGTGCCCCTACTCATCCCCAGC-GTCCTCCTT-CTGTACCTTGGGGACT--AGGCTCAGCCTTGATGGCACAGTTTCTGTTTAATAAAATACATTCTATTCAGTAATC Rabbit_beta_3 AATAAAAGGACGAGCCTTAG--AGCAGTTTCACATAC-TTGCTTCTGAGACATCTG----AGACTATCAGCAAGCTCAGCGAGCTCCTAGACCAGACATCGTAGGCC-CTGGGGTCCAGGACA-AGGCAGAGGAGGAATGAAACTGAGCCTGGCAGGACTC-C------AGGCCCTTTCTCAGGACTTGTGAAGCTCTCT---GATACTCCCACCACTATTGTTCTGT-----CTCTATAGA----------CCCCTT------------CACTGTAG--GACAGAGCTTCTAGGAAGAAGCTTTATCCCTCAAATAATAATGAAAATAAT---------AAAACTACTCTAAGAAATTATTTGTGATGGTATTGAGTTTA ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE=unord PolyTcount=MINSTEPS ; END;